Issues

• Micapipe dMRI processing fails for some subjects, dwifslpreproc and libcudart.so.9.1 issue

  MICA-MNI/micapipe#184 · Filter by author MRTanja opened on Sep 27, 2026

• Mica pipe on multi-echo data

  MICA-MNI/micapipe#183 · Filter by author jeanborn opened on Aug 19, 2026
  1

• Using T2 for proc_surf

  MICA-MNI/micapipe#182 · Filter by author Edouard2laire opened on Aug 4, 2026

• Non-brain masked FLAIR

  MICA-MNI/micapipe#178 · Filter by author mendelsonD opened on Jun 19, 2026

• Generating Contralateral Surface Registration files

  MICA-MNI/micapipe#172 · Filter by author adascal1 opened on Mar 13, 2026

• fMRIprep integration

  enhancement
  Feature

  MICA-MNI/micapipe#171 · Filter by author royj23 opened on Nov 24, 2025
  

• New templates for the thalamus and hippocampus

  MICA-MNI/micapipe#169 · Filter by author zihuaihuai opened on Oct 31, 2025
  1

  

• Add longitudinal processing

  MICA-MNI/micapipe#168 · Filter by author thomshaw92 opened on Oct 31, 2025

• incorporation of ME-ICA into multi echo pipeline as an alternative to tedana (Kundu talk)

  MICA-MNI/micapipe#163 · Filter by author neuroimagingdatascience opened on Sep 30, 2025

• proc_structural & post_structural

  MICA-MNI/micapipe#161 · Filter by author rcruces opened on Sep 30, 2025
  

• proc_func

  MICA-MNI/micapipe#160 · Filter by author rcruces opened on Sep 30, 2025
  

• Atlas, Surfaces, and Connectomes

  MICA-MNI/micapipe#159 · Filter by author rcruces opened on Sep 30, 2025
  

• Naming scheme

  MICA-MNI/micapipe#158 · Filter by author rcruces opened on Sep 30, 2025
  

• QC Management and Reorganization

  MICA-MNI/micapipe#157 · Filter by author rcruces opened on Sep 29, 2025
  

• SWM Update

  MICA-MNI/micapipe#155 · Filter by author rcruces opened on Sep 29, 2025
  

• DWI and SC updates

  MICA-MNI/micapipe#154 · Filter by author rcruces opened on Sep 29, 2025
  

• mp2rage_denoise.py input error

  documentationhelp wantedquestion
  MICA-MNI/micapipe#146 · Filter by author pesojka opened on Dec 23, 2024
  1

• Lunching the pipeline on Compute-canada

  MICA-MNI/micapipe#144 · Filter by author mahdimplus opened on Dec 17, 2024
  2

• Error: RepetitionTimeNot Found

  MICA-MNI/micapipe#143 · Filter by author avinafsh1998 opened on Dec 3, 2024

• Snakemake mod

  MICA-MNI/micapipe#142 · Filter by author zihuaihuai opened on Nov 26, 2024
  

• Include CNR in eddy_qc ouputs

  enhancement
  MICA-MNI/micapipe#141 · Filter by author donnagift opened on Nov 21, 2024
  

• CSD on single-shell diffusion data: should this be done with CSD or SS3T instead of MSMT-CSD?

  MICA-MNI/micapipe#140 · Filter by author MRTanja opened on Oct 31, 2024

• DTI metrics derived from multi-shell data with high b-values

  MICA-MNI/micapipe#139 · Filter by author MRTanja opened on Oct 31, 2024

• MRtrix3 was not found during proc_structural

  MICA-MNI/micapipe#137 · Filter by author DannyStruijk opened on Oct 21, 2024

• Help pulling from docker -- metadata for targets expired?

  MICA-MNI/micapipe#136 · Filter by author hansen508 opened on Oct 15, 2024