From 62a95842ba22daa804e085e0d5721eca27b8f2ca Mon Sep 17 00:00:00 2001
From: danielsharritt <325811797+danielsharritt@users.noreply.github.com>
Date: Tue, 8 Sep 2026 19:14:56 +0000
Subject: [PATCH] STARsolo: advance countMatMult stride once per gene, not once
 per dedup option

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
---
 source/SoloFeature_collapseUMIall.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/source/SoloFeature_collapseUMIall.cpp b/source/SoloFeature_collapseUMIall.cpp
index 630cb3ed..078d8fed 100644
--- a/source/SoloFeature_collapseUMIall.cpp
+++ b/source/SoloFeature_collapseUMIall.cpp
@@ -527,8 +527,8 @@ void SoloFeature::collapseUMIperCB(uint32 iCB, vector<uint32> &umiArray, vector<
                     if (pSolo.multiMap.yes.EM)
                         countMatMult.m[ind1 + pSolo.multiMap.countInd.EM] = gEem[indDedup][gm.second];                    
                     
-                    countMatMult.i[iCB+1] += countMatMult.s;
                 };
+                countMatMult.i[iCB+1] += countMatMult.s;
             };
         };
     };