Issues

• Talon Gene and Transcript Naming

  mortazavilab/TALON#169 · Filter by author asimdebnath1616-commits opened on Mar 6, 2026

• TALON v6.x fails at runtime due to missing importlib.metadata

  mortazavilab/TALON#168 · Filter by author monicagiraldochica opened on Feb 12, 2026

• What transcript models are included in custom TALON gtf?

  mortazavilab/TALON#167 · Filter by author mhoang22 opened on Dec 17, 2025

• Add configurable SQLite PRAGMA settings for performance optimization

  mortazavilab/TALON#166 · Filter by author Austin-s-h opened on Dec 2, 2025

• Error running TALON (talon.py) in MacOS

  mortazavilab/TALON#164 · Filter by author a-espuela opened on Jul 25, 2025

• Installation issues with updated pyranges v0.1.4

  mortazavilab/TALON#163 · Filter by author snkravitz opened on Jul 17, 2025
  2

• Duplicate Transcript IDs

  mortazavilab/TALON#161 · Filter by author jchariker opened on Apr 27, 2025

• Can't Minimize Talon Window during installation

  mortazavilab/TALON#160 · Filter by author CallMeYuuuu opened on Mar 7, 2025

• Running TALON Efficiently with 200M Reads Data

  mortazavilab/TALON#159 · Filter by author alexander-ahn opened on Feb 20, 2025
  1

• Obtain readthrough transcripts

  mortazavilab/TALON#158 · Filter by author Zhuxitong opened on Nov 27, 2024

• gtf issue with talon_initialize_database

  mortazavilab/TALON#157 · Filter by author dl870 opened on Nov 20, 2024

• ValueError: SAM/BAM file 'sam_file' does not exist!

  mortazavilab/TALON#156 · Filter by author handesome opened on Nov 4, 2024
  2

• ERROR in batch_add_transcripts (UNIQUE constraint failed)

  mortazavilab/TALON#155 · Filter by author sbresnahan opened on Sep 22, 2024

• Problem installing Conda version

  mortazavilab/TALON#154 · Filter by author emsisson opened on Sep 17, 2024

• Error with samtools index during TALON run

  mortazavilab/TALON#153 · Filter by author jadedavis5 opened on Aug 28, 2024

• ERROR : [process_sams.py:108:preprocess_sam] when running talon

  mortazavilab/TALON#152 · Filter by author Dongxu-Zheng opened on Jun 7, 2024
  7

• The transcript numbers don't match between example_raw_talon.gtf and example_talon_abundance.tsv

  mortazavilab/TALON#151 · Filter by author dudududu12138 opened on Jun 3, 2024

• Multithreading is not working

  mortazavilab/TALON#150 · Filter by author lscdanson opened on Apr 23, 2024
  2

• What is the meaning of ISM None

  mortazavilab/TALON#148 · Filter by author kathryncrouch opened on Feb 16, 2024
  2

• Issue with talon filter

  mortazavilab/TALON#142 · Filter by author rugilemat opened on Oct 27, 2023
  4

• Problem with talon_initialize_database

  mortazavilab/TALON#140 · Filter by author Kiliankleemann opened on Oct 19, 2023
  13

• TALON support for CIGAR strings found in pbmm2 sam files

  mortazavilab/TALON#132 · Filter by author ddpinto opened on Jul 13, 2023

• Rules for considering splicing variants as identical in TALON

  mortazavilab/TALON#126 · Filter by author mihshimada opened on Feb 15, 2023
  2

• Error: value too large to convert to int16_t

  mortazavilab/TALON#120 · Filter by author catsargent opened on Jan 7, 2023
  1

• numpy<1.24.0 should be added as a requirement

  mortazavilab/TALON#119 · Filter by author catsargent opened on Jan 7, 2023