Issues

• "on pull request" not robust enough

  bug
  wikipathways/wikipathways-database#117 · Filter by author egonw opened on Sep 7, 2026
  

• add EFSA funding to AOP Portal

  wikipathways/wikipathways-database#103 · Filter by author egonw opened on Aug 23, 2026
  

• Disease ontology term not converted correctly from gpml to md

  bug
  wikipathways/wikipathways-database#70 · Filter by author khanspers opened on Dec 13, 2025
  1

  

• License info is missing

  wikipathways/wikipathways-database#62 · Filter by author egonw opened on Aug 11, 2024

• SARS-CoV-2 protein identifiers not loaded and mappings not available in the assets

  wikipathways/wikipathways-database#59 · Filter by author egonw opened on May 23, 2024

• WP2804 contains SBGN notation which breaks the build process

  help wanted
  wikipathways/wikipathways-database#58 · Filter by author egonw opened on Mar 17, 2024
  

• Use the GitHub discussion actions to automatically post daily GPML sync reports as discussion comments

  wikipathways/wikipathways-database#56 · Filter by author jmillanacosta opened on Mar 15, 2024
  1

• Another way to check for community pathways not yet approved

  documentation
  wikipathways/wikipathways-database#53 · Filter by author AlexanderPico opened on Jan 23, 2024
  1

  

• generate-references fails to log error with incorrect PubMed ID

  bug
  wikipathways/wikipathways-database#50 · Filter by author larsgw opened on Nov 8, 2023
  1

• update needed for fetching the right BridgeDb Derby files

  wikipathways/wikipathways-database#47 · Filter by author egonw opened on Aug 8, 2023
  

• GitHub Actions for MMT (Metabolite version of GMT)

  wikipathways/wikipathways-database#44 · Filter by author kozo2 opened on Jun 28, 2023
  4

• only download these two files once, instead of for each species again

  wikipathways/wikipathways-database#39 · Filter by author egonw opened on May 6, 2023

• Wikidata identifiers are missing in tsv files for genes

  enhancement
  wikipathways/wikipathways-database#38 · Filter by author hasanbalci opened on May 4, 2023
  1

  

• too many hardcoded Ensembl versions in the actions

  bug
  wikipathways/wikipathways-database#29 · Filter by author egonw opened on Mar 12, 2023
  1

  

• Richer metadata for pathways

  enhancement
  wikipathways/wikipathways-database#24 · Filter by author larsgw opened on Feb 11, 2023

• GPMLs that break json-svg conversion

  bug
  wikipathways/wikipathways-database#12 · Filter by author AlexanderPico opened on Dec 12, 2022
  8

  

• Possible missing PMIDs in WP0-refs.tsv

  bug
  wikipathways/wikipathways-database#2 · Filter by author larsgw opened on Jan 15, 2022
  3