[cyberuniversal]

Summary

• replace the issue-log-style landing page with a concise paper-first README and citation block
• retain only final aggregate evidence and durable research protocols in the publication-facing tree
• remove obsolete failed-run audits, repair gates, canaries, private smoke notebooks, and their tests (recoverable from Git history)
• add focused indexes for docs/, results/, and scripts/
• preserve the reviewed manuscript fixes and simplify its build guide

Validation

• python -m compileall -q scripts tests
• python -m unittest discover -s tests -q (271 tests)
• all retained JSON parses
• all local Markdown links resolve
• credential-pattern scan passes
• manuscript builds as a 9-page A4 PDF with embedded fonts and resolved references
• all 9 rendered manuscript pages visually inspected

Closes #210