Hi,
It's a perfect soft!
How to use this soft? when I run the following command, but it does not work, would you mind giving me some suggestions?
(lams) deyuan@deyuan:/media/deyuan/NCBI/Norgal_animal_data$ LMAS --fastq SRR2089775 --megahit --megahitKmerSize --reference /media/deyuan/NCBI/Norgal_animal_data/SRR2089775/2.NOVOPlasty/Circularized_assembly_1_SRR2089775.fasta
N E X T F L O W ~ version 23.04.1
Launching /home/deyuan/miniconda3/envs/lams/share/lmas-2.0.x/main.nf [soggy_lichterman] DSL2 - revision: 929afaa022
Trace file already exists: /media/deyuan/NCBI/Norgal_animal_data/pipeline_stats.txt -- enable the 'trace.overwrite' option in your config file to overwrite existing files
(lams) deyuan@deyuan:/media/deyuan/NCBI/Norgal_animal_data$
deyuan
Hi,
It's a perfect soft!
How to use this soft? when I run the following command, but it does not work, would you mind giving me some suggestions?
(lams) deyuan@deyuan:/media/deyuan/NCBI/Norgal_animal_data$ LMAS --fastq SRR2089775 --megahit --megahitKmerSize --reference /media/deyuan/NCBI/Norgal_animal_data/SRR2089775/2.NOVOPlasty/Circularized_assembly_1_SRR2089775.fasta
N E X T F L O W ~ version 23.04.1
Launching
/home/deyuan/miniconda3/envs/lams/share/lmas-2.0.x/main.nf[soggy_lichterman] DSL2 - revision: 929afaa022Trace file already exists: /media/deyuan/NCBI/Norgal_animal_data/pipeline_stats.txt -- enable the 'trace.overwrite' option in your config file to overwrite existing files
(lams) deyuan@deyuan:/media/deyuan/NCBI/Norgal_animal_data$
deyuan