RNA-seq bootcamp - Day5: HPC and Pre-Built GenPipes/Nextflow Pipelines

Overview

Participants will be introduced to high-performance computing (HPC) infrastructure. Additionally, they will become familiar with scientific workflow systems (SWSs), including Nextflow and GenPipes, as well as their RNA-seq pipelines and input files.

Outline

• High performance computing (HPC)
• Digital Research Alliance of Canada (Compute Canada)
• Nextflow
• Genpipes
• Hands-on

References

This workshop uses data from this study.

This workshop used material adapted from the following sources:

• DRAC
• GenPipes
• nf-core