Issues

• changing displayId of loaded SequenceFeature has strange outcome when later writing to rdf

  SynBioDex-archive/libSBOLj#42 · Filter by author nroehner opened on Aug 10, 2011

• encrypted ID of SequenceFeature not loaded when using IOTools.fromRdfXml()

  SynBioDex-archive/libSBOLj#41 · Filter by author nroehner opened on Aug 10, 2011

• java.lang.NoSuchMethodError: java.util.Properties.load(Ljava/io/Reader;)V

  bug
  SynBioDex-archive/libSBOLj#40 · Filter by author mgaldzic opened on Jun 5, 2011 · 1.0
  3

• consider new name for SbolService

  SynBioDex-archive/libSBOLj#39 · Filter by author mgaldzic opened on May 31, 2011 · 1.0

• fulfill all test cases

  priority
  SynBioDex-archive/libSBOLj#38 · Filter by author mgaldzic opened on May 30, 2011 · ver 0.5

• remove the dependency on BioJava

  SynBioDex-archive/libSBOLj#35 · Filter by author mgaldzic opened on May 14, 2011

• DNARef in DNASequence should be mutually exclusive with DNASequence

  SynBioDex-archive/libSBOLj#33 · Filter by author mgaldzic opened on Mar 28, 2011
  1

• add read Json method to IOTools

  to_implement
  SynBioDex-archive/libSBOLj#30 · Filter by author mgaldzic opened on Mar 25, 2011 · ver 0.5

• add optional uri references to the DNAComponent

  future
  SynBioDex-archive/libSBOLj#29 · Filter by author mgaldzic opened on Mar 19, 2011

• doc should explain why SO type a is a URI

  javadocsto_implement
  SynBioDex-archive/libSBOLj#28 · Filter by author mgaldzic opened on Mar 19, 2011

• the "reference" type for dnaRef is underdefined

  to_implement
  SynBioDex-archive/libSBOLj#27 · Filter by author mgaldzic opened on Mar 19, 2011 · ver 0.5

• using SBOLutil.toJson or .toRDF should work for any SBOL object

  to_implement
  SynBioDex-archive/libSBOLj#24 · Filter by author mgaldzic opened on Mar 18, 2011

• plan an Exceptions scheme

  to_implement
  SynBioDex-archive/libSBOLj#22 · Filter by author mgaldzic opened on Mar 16, 2011

• DnaComponent.equals, "getClass() != obj.getClass()" should be > "obj instanceof DnaComponent"

  to_implement
  SynBioDex-archive/libSBOLj#21 · Filter by author mgaldzic opened on Mar 16, 2011 · ver 0.5
  1

• change insertXXX methods to add(object)

  to_implement
  SynBioDex-archive/libSBOLj#19 · Filter by author mgaldzic opened on Mar 16, 2011 · ver 0.5

• use Ham's Naming Convention for Sequence Starts

  to_implement
  SynBioDex-archive/libSBOLj#15 · Filter by author mgaldzic opened on Mar 16, 2011 · ver 0.5

• upgrade to BioJava 3

  future
  SynBioDex-archive/libSBOLj#11 · Filter by author mgaldzic opened on Mar 3, 2011

• SequenceAnnotation start, stop coordinates

  futurevalidation
  SynBioDex-archive/libSBOLj#2 · Filter by author mgaldzic opened on Feb 10, 2011