Search PubMed for fellows/residents and build Networks + from it

.github/workflows/refresh-doim-directory.yml

@@ -86,6 +86,10 @@ jobs:
           }
           uv run --locked doim-refresh ${{ steps.mode.outputs.args }}
           uv run --locked doim-release-check --local-only
+          # Fellows/residents (config/trainees.toml) are searched in full every week, then
+          # Networks + is rebuilt on the refreshed faculty and trainee publications.
+          uv run --locked doim-trainee-publications --strict
+          uv run --locked doim-network-plus
 
       - name: Propose the refreshed directory
         if: steps.mode.outputs.skip != 'true'
@@ -108,8 +112,16 @@ jobs:
             data/publications.json
             data/publication-details.json
             data/collaboration.json
+            data/trainee-publications.json
+            data/trainee-publication-details.json
+            data/network-plus.json
+            data/network-plus-nodes.csv
+            data/network-plus-edges.csv
             data/rag/**
             site/data/directory.json
             site/data/publications.json
             site/data/publication-details.json
             site/data/collaboration.json
+            site/data/network-plus.json
+            site/data/network-plus-nodes.csv
+            site/data/network-plus-edges.csv

README.md

@@ -82,6 +82,26 @@ normally only needed after running
 limitations, and [`site/assets/vendor/VENDOR.md`](site/assets/vendor/VENDOR.md) for the one
 third-party library the site loads (vendored locally, not from a CDN) to draw it.
 
+## Fellows, residents, and Networks +
+
+The Networks + view adds the program's fellows and residents, listed in
+`config/trainees.toml`. Each is searched in PubMed like faculty, on their full author name at
+a University of Utah affiliation, and the network is rebuilt from both sets of publications:
+
+```bash
+uv run --locked doim-trainee-publications --strict
+uv run --locked doim-network-plus
+```
+
+The weekly directory refresh runs both. When the program sends a new roster spreadsheet,
+regenerate the config (e-mail addresses are dropped; hand-added `also_known_as` names and
+`pubmed_query` overrides of people still on the roster are kept). The next search drops the
+publications of people no longer on it:
+
+```bash
+uv run --locked --extra trainees doim-trainee-roster "<roster>.xlsx"
+```
+
 ## Configuration
 
 `config/directory.toml` is the active source manifest. It lists the official