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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

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The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler, GOSemSim, DOSE), phylogenetic data integration and visualization (e.g., treeio, ggtree, ggtreeExtra), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak, aplot, enrichplot, ChIPseeker), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    πŸ“Š A universal enrichment tool for interpreting omics data

    R 1.2k 267

  2. ggtree ggtree Public

    πŸŽ„Visualization and annotation of phylogenetic trees

    R 935 183

  3. aisdk aisdk Public

    πŸ€– A production-grade framework for building AI-powered applications in R.

    R 76 8

  4. Rho Rho Public

    an agent-native desktop workbench for R

    TypeScript 33 9

  5. SVP SVP Public

    Spatially Variable Profiler

    R 12

  6. sclet sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    R 24 8

Repositories

Showing 10 of 144 repositories
  • ggcircos Public
    YuLab-SMU/ggcircos's past year of commit activity
    R 3 GPL-3.0 1 1 0 Updated Oct 25, 2026
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE's past year of commit activity
    R 125 34 0 0 Updated Oct 25, 2026
  • Rho Public

    an agent-native desktop workbench for R

    YuLab-SMU/Rho's past year of commit activity
    TypeScript 33 AGPL-3.0 9 15 2 Updated Oct 25, 2026
  • Rho-plugins Public

    Official scientific plugins and native runtime implementations for Rho

    YuLab-SMU/Rho-plugins's past year of commit activity
    TypeScript 0 AGPL-3.0 0 0 0 Updated Oct 25, 2026
  • treedata-book-2ed Public

    πŸ“– Data Integration, Manipulation and Visualization of Phylogenetic Trees

    YuLab-SMU/treedata-book-2ed's past year of commit activity
    HTML 0 1 0 0 Updated Oct 25, 2026
  • ggmsa Public

    πŸš₯ Visualizing publication-quality multiple sequence alignment using ggplot2

    YuLab-SMU/ggmsa's past year of commit activity
    R 220 30 45 0 Updated Oct 25, 2026
  • clusterProfiler Public

    πŸ“Š A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler's past year of commit activity
    R 1,243 267 251 0 Updated Oct 25, 2026
  • ygc-blog Public

    Guangchuang Yu's Blog

    YuLab-SMU/ygc-blog's past year of commit activity
    TypeScript 0 MIT 0 0 0 Updated Oct 24, 2026
  • sclet Public

    A State-Aware Single-Cell and Spatial Transcriptomics Toolkit for SingleCellExperiment

    YuLab-SMU/sclet's past year of commit activity
    R 24 8 0 0 Updated Oct 24, 2026
  • Rho-core Public

    Generic Rho Host, operation journal, public protocol and SDK

    YuLab-SMU/Rho-core's past year of commit activity
    Rust 0 AGPL-3.0 0 0 0 Updated Oct 23, 2026