TCMDATA/DESCRIPTION at master · YuLab-SMU/TCMDATA · GitHub

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Package: TCMDATA
Title: Traditional Chinese Medicine Data Analysis and Visualization
Version: 1.0.0
Authors@R: c(
    person(given = "Nan",         family = "He", email = "nanh302311@gmail.com",    role = c("aut", "cre"), comment = c(ORCID = "0009-0008-6932-3867")),
    person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "ths"), comment = c(ORCID = "0000-0002-6485-8781")),
    person(given = "Shuangbin",   family = "Xu", email = "xshuangbin@163.com",      role = "ctb",           comment = c(ORCID = "0000-0003-3513-5362"))
  )
Description: A comprehensive R package for Traditional Chinese Medicine (TCM)
    network pharmacology research. Enables bidirectional queries of herb,
    compound, and target databases; PubChem-based molecule annotation and
    similarity search; pharmacological network construction with topological
    analysis; herb-based enrichment analysis compatible with GO/KEGG; PPI
    network analysis with 15+ centrality metrics and robustness evaluation;
    machine learning-based biomarker screening (LASSO, Elastic Net, Random
    Forest, SVM-RFE, XGBoost); LLM-powered result interpretation; and
    publication-ready visualizations including Sankey diagrams, docking
    heatmaps, and lollipop plots.
Depends:
    R (>= 4.5.0)
Imports:
    aplot,
    clusterProfiler,
    dplyr,
    enrichplot,
    ggfun,
    ggplot2,
    ggrepel,
    ggtangle,
    ggtree,
    grDevices,
    igraph,
    jsonlite,
    methods,
    purrr,
    rlang,
    scales,
    stats,
    tibble,
    tidyr,
    utils,
    yulab.utils
Suggests:
    aplotExtra,
    Matrix,
    paletteer,
    RColorBrewer,
    aisdk (>= 1.5.0),
    aisdk.providers (>= 0.1.0),
    Boruta,
    caret,
    circlize,
    ComplexHeatmap,
    dotenv,
    glmnet,
    httr,
    kernlab,
    pROC,
    randomForest,
    xgboost,
    xml2,
    rcdk,
    webchem,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    WGCNA,
    ggalluvial,
    ggvenn,
    ggthemes,
    AnnotationDbi,
    org.Hs.eg.db,
    shiny,
    visNetwork
Remotes:
    YuLab-SMU/aplotExtra,
    YuLab-SMU/aisdk,
    YuLab-SMU/aisdk.providers
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
LazyData: true
LazyDataCompression: xz
Config/testthat/edition: 3