Dr. Beiko's Lab

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1. gengis gengis Public

   GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environm…

   C++ 29 12

2. arete arete Public

   AMR/VF LGT focused bacterial genomics analysis workflow

   Python 28 8

3. mimb_16S mimb_16S Public

   Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology

   Shell 25 8

4. ananke ananke Public

   Ananke: Clustering marker gene data by time-series patterns

   Python 11 2

5. MEGASAT MEGASAT Public

   High-throughput analysis of targeted microsatellite sequences.

   Perl 4 3

6. sarand sarand Public

   Tool to find and extract the surrounding gene neighbourhood of target genes (such as AMR genes) from GFA-formatted assembly graphs

   Python 4 4