Issues

• Setup script should check if resources are already downloaded

  Task

  deweylab/MetaSRA-pipeline#282 · Filter by author sverchkov opened on Oct 18, 2026

• learn_classifier.py & run_on_entire_dataset.py files missing important json files.

  deweylab/MetaSRA-pipeline#280 · Filter by author Grooot266 opened on Dec 29, 2025

• Classifier contains outdated CVCL ontology tree

  deweylab/MetaSRA-pipeline#278 · Filter by author dmalzl opened on Nov 29, 2023

• Example code couldn't run

  deweylab/MetaSRA-pipeline#275 · Filter by author albert-ying opened on Nov 9, 2022
  6

• Need to download some data before using ntlk

  Task

  deweylab/MetaSRA-pipeline#270 · Filter by author steves880106 opened on Oct 3, 2018
  3

• Issue for setting PYTHONPATH when using conda as python environment

  deweylab/MetaSRA-pipeline#269 · Filter by author steves880106 opened on Oct 3, 2018
  2

• Add terms to samples in study SRP063875

  QC
  deweylab/MetaSRA-pipeline#267 · Filter by author mbernste opened on May 2, 2018

• Add terms to samples in study SRP082314

  QC
  deweylab/MetaSRA-pipeline#266 · Filter by author mbernste opened on May 2, 2018

• Sample-types misclassified in study SRP082310

  QC
  deweylab/MetaSRA-pipeline#265 · Filter by author mbernste opened on May 2, 2018

• Sample-types misclassified for study SRP113321

  QC
  deweylab/MetaSRA-pipeline#264 · Filter by author mbernste opened on May 1, 2018

• Sample-type of sample SRS452633 should be a 'tissue' sample

  QC
  deweylab/MetaSRA-pipeline#263 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP115815

  QC
  deweylab/MetaSRA-pipeline#262 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP096209

  QC
  deweylab/MetaSRA-pipeline#261 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP051369

  QC
  deweylab/MetaSRA-pipeline#260 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP056049

  QC
  deweylab/MetaSRA-pipeline#259 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP065566

  QC
  deweylab/MetaSRA-pipeline#258 · Filter by author mbernste opened on May 1, 2018

• Samples in study SRP101669 should map to CVCL:0511

  QC
  deweylab/MetaSRA-pipeline#257 · Filter by author mbernste opened on May 1, 2018

• Add terms to samples in study SRP067631

  QC
  deweylab/MetaSRA-pipeline#256 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP071837

  QC
  deweylab/MetaSRA-pipeline#255 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP019248

  QC
  deweylab/MetaSRA-pipeline#254 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP078508

  QC
  deweylab/MetaSRA-pipeline#253 · Filter by author mbernste opened on May 1, 2018

• Modify terms for samples in study SRP104124

  QC
  deweylab/MetaSRA-pipeline#252 · Filter by author mbernste opened on May 1, 2018

• Sample-types misclassified in study SRP035679

  QC
  deweylab/MetaSRA-pipeline#251 · Filter by author mbernste opened on May 1, 2018

• Add terms to samples in study SRP062865

  QC
  deweylab/MetaSRA-pipeline#250 · Filter by author mbernste opened on Apr 30, 2018

• Remove terms from samples in study SRP040806

  QC
  deweylab/MetaSRA-pipeline#249 · Filter by author mbernste opened on Apr 30, 2018