Because we use a reference genome for input, we can easily generate rGFA. This also gets around the many issues of representing paths in GFA 1 and GFA 2.
We need only three tags to make minigraph-compatible rGFA output:
| Tag |
Type |
Description |
| SN |
Z |
Name of stable sequence from which the segment is derived |
| SO |
i |
Offset on the stable sequence |
| SR |
i |
Rank. 0 if on a linear reference genome; >0 otherwise |
For reference graphs, this is pretty simple. We'll need to implement pulling some type of VCF name in as well though.
Because we use a reference genome for input, we can easily generate rGFA. This also gets around the many issues of representing paths in GFA 1 and GFA 2.
We need only three tags to make minigraph-compatible rGFA output:
For reference graphs, this is pretty simple. We'll need to implement pulling some type of VCF name in as well though.