This repository contains the scripts for the Rumex pollen competition project. Here's a brief description of the folders containing scripts for different analyses:
variant_calling: Quality control, alignment, variant calling and filtering.VCF_filtering: Filtering for informative sites to analyze allele frequencies.parentage: Assessing genetic relatedness among the samples.coverage: Anlyzing sequencing coverage on the autosomes and sex chromosomes.get_AF: Detecting allele frequency distortions in pollen and leaf.