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Repositories

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  • nucleusNodeStatus Public

    Node Status for Eris Nucleus

    immunogenomics/nucleusNodeStatus's past year of commit activity
    HTML 0 0 0 0 Updated Oct 11, 2026
  • singlecellmethods Public

    Collection of useful methods for single cell analysis

    immunogenomics/singlecellmethods's past year of commit activity
    Jupyter Notebook 16 GPL-3.0 5 1 0 Updated Oct 9, 2026
  • vima Public

    Variational inference-based microniche analysis

    immunogenomics/vima's past year of commit activity
    Python 14 0 0 0 Updated Oct 7, 2026
  • Dynema.jl Public
    immunogenomics/Dynema.jl's past year of commit activity
    Julia 6 MIT 0 0 0 Updated Sep 29, 2026
  • Dynema_analysis Public

    Contains scripts using Dynema to map single-cell eQTL in T cells from TBRU and OneK1K datasets

    immunogenomics/Dynema_analysis's past year of commit activity
    Julia 3 MIT 0 0 0 Updated Sep 24, 2026
  • cna Public

    Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

    immunogenomics/cna's past year of commit activity
    Python 57 GPL-3.0 5 0 0 Updated Sep 24, 2026
  • presto Public

    Fast Wilcoxon and auROC

    immunogenomics/presto's past year of commit activity
    R 219 46 15 2 Updated Sep 20, 2026
  • starCAT Public

    Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs

    immunogenomics/starCAT's past year of commit activity
    Jupyter Notebook 114 MIT 5 6 2 Updated Sep 17, 2026
  • erisNodeStatus Public

    Tracker for ERIS cluster system

    immunogenomics/erisNodeStatus's past year of commit activity
    HTML 0 0 0 0 Updated Sep 12, 2026
  • Dynema_datasets Public

    Simulated datasets to demonstrate Dynema's application to map single-cell eQTLs

    immunogenomics/Dynema_datasets's past year of commit activity
    0 MIT 0 0 0 Updated Sep 6, 2026

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