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@merenlab

Meren Lab

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  1. anvio anvio Public

    An analysis and visualization platform for 'omics data

    Python 536 170

  2. oligotyping oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    Python 41 18

  3. illumina-utils illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    Python 95 30

Repositories

Showing 10 of 26 repositories
  • anvio Public

    An analysis and visualization platform for 'omics data

    merenlab/anvio's past year of commit activity
    Python 536 GPL-3.0 170 198 25 Updated Sep 25, 2026
  • marine-microbial-observatories Public

    Tracking time-series programs, large-scale expeditions, and coordination networks that focus on generating molecular data on marine microbes

    merenlab/marine-microbial-observatories's past year of commit activity
    JavaScript 0 CC-BY-4.0 1 1 0 Updated Sep 25, 2026
  • anvio.org Public

    The anvi'o community web page

    merenlab/anvio.org's past year of commit activity
    HTML 6 13 3 1 Updated Sep 25, 2026
  • merenlab.org Public

    Web content for Meren Lab

    merenlab/merenlab.org's past year of commit activity
    HTML 12 MIT 31 2 2 Updated Sep 23, 2026
  • oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    merenlab/oligotyping's past year of commit activity
    Python 41 GPL-2.0 18 5 0 Updated Jul 17, 2026
  • data-availability-checklist Public

    A data-conscious checklist for the reviewers of 'omics studies who champion open science

    merenlab/data-availability-checklist's past year of commit activity
    5 CC0-1.0 0 0 0 Updated Apr 15, 2026
  • hifmb-displays Public

    A tiny codebase to deal with the displays at the HIFMB foyer

    merenlab/hifmb-displays's past year of commit activity
    HTML 0 0 0 0 Updated Mar 29, 2026
  • world-map-r Public

    A simple script to display stuff on a world map with R and ggplot

    merenlab/world-map-r's past year of commit activity
    R 18 GPL-3.0 4 1 0 Updated Feb 17, 2026
  • clusterize Public Forked from ekiefl/clusterize

    The most basic SLURM wrapper

    merenlab/clusterize's past year of commit activity
    Python 1 MIT 2 0 0 Updated Feb 12, 2026
  • rosalind Public

    A simple Meren Lab bot to notify our Slack regarding our jobs on the HPC System ROSA at UOL

    merenlab/rosalind's past year of commit activity
    Python 0 0 0 0 Updated Dec 21, 2025
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