Issues

• pod5: read the V7 reads table (channel back to uint16 + channel_32bit)

  rnabioco/escapepod-rs#485 · Filter by author jayhesselberth opened on Oct 11, 2026

• perf(demux): pipeline demux basecall --gpu

  enhancement
  rnabioco/escapepod-rs#477 · Filter by author jayhesselberth opened on Oct 11, 2026
  1

• guard: escpod must never write a POD5 with a non-uniform signal batch stride (dorado/pod5 can't resolve it)

  enhancement
  rnabioco/escapepod-rs#462 · Filter by author jayhesselberth opened on Oct 10, 2026

• escpod align/resquiggle/classify: @PG CL from raw argv can panic or fail SAM header validation

  enhancement
  rnabioco/escapepod-rs#427 · Filter by author jayhesselberth opened on Sep 26, 2026

• spec: multiclass amino-acid identity bundles in escapepod-classify

  rnabioco/escapepod-rs#394 · Filter by author jayhesselberth opened on Sep 23, 2026

• pod5: Dataset/DatasetCache follow-up — parallel opens, parallel decode_bulk, partitioned id lookup, cache key granularity

  enhancement
  rnabioco/escapepod-rs#385 · Filter by author jayhesselberth opened on Sep 16, 2026

• Revisit tract-only GPU demux (drop ort) once tract-cuda can run the LSTM CRF encoders

  enhancementupstream-check
  rnabioco/escapepod-rs#322 · Filter by author jayhesselberth opened on Sep 5, 2026
  1

• demux GPU tuning: three knobs still measured only on a synthetic input

  rnabioco/escapepod-rs#301 · Filter by author jayhesselberth opened on Aug 30, 2026
  1

• distribution: ship a GPU runtime users don't have to assemble (conda package and/or container)

  rnabioco/escapepod-rs#278 · Filter by author jayhesselberth opened on Aug 26, 2026
  1

• Reader::open applies MADV_SEQUENTIAL to the whole mapping, including for random-access and metadata-only work

  rnabioco/escapepod-rs#256 · Filter by author jayhesselberth opened on Aug 23, 2026

• Expose keep-last-N (and event count) under --warpdemux-compat so window width can be tuned

  rnabioco/escapepod-rs#157 · Filter by author jayhesselberth opened on Jul 27, 2026
  4

• Package escapepod for Bioconda

  rnabioco/escapepod-rs#135 · Filter by author jayhesselberth opened on Jul 20, 2026

• Enable lazy remote POD5 reading (S3 + HTTPS via range requests)

  enhancement
  rnabioco/escapepod-rs#83 · Filter by author jayhesselberth opened on Jun 24, 2026
  1