Issues

• Output file exists check

  s-andrews/FastQC#181 · Filter by author jannine-forst opened on Mar 13, 2026

• Downsampling support

  s-andrews/FastQC#160 · Filter by author grendon opened on Aug 22, 2025
  1

• Installation of fastqc - MacOS Monterey - for command line

  s-andrews/FastQC#133 · Filter by author NgugiJK opened on Mar 22, 2024
  1

• Bug: FastQC averages phred scores naively

  s-andrews/FastQC#110 · Filter by author rhpvorderman opened on Jan 11, 2023
  2

• Support separate analysis of R1/R2 in paried end BAM files

  enhancement
  s-andrews/FastQC#66 · Filter by author s-andrews opened on Dec 3, 2020
  2

  

• Attempt to detect sorted input files

  s-andrews/FastQC#65 · Filter by author s-andrews opened on Nov 17, 2020
  1

  

• CRAM as input format?

  s-andrews/FastQC#54 · Filter by author FriederikeHanssen opened on Aug 18, 2020
  16

  

• Wrong Illumina TruSeq adapter sequences in contaminant_list.txt?

  s-andrews/FastQC#52 · Filter by author aushev opened on Jun 30, 2020

• Empty plots in HTML report

  s-andrews/FastQC#44 · Filter by author soungalo opened on Jan 10, 2020

• Saturation curve in duplication module

  enhancement
  s-andrews/FastQC#33 · Filter by author s-andrews opened on Apr 9, 2019
  

• Report FCID and barcodes from fastq file

  enhancement
  s-andrews/FastQC#4 · Filter by author patidarr opened on Apr 11, 2018
  2