Circos-plotting-breseq-output-annotated

Plotting with circos of single nucleotide polymorphisms determinued using breseq with additional SNP annotations

Dependencies

This script requires the following R packages:

• VariantAnnotation
• Rsamtools
• circlize
• GenomicRanges
• rtracklayer
• Biostrings
• RColorBrewer
• readr
• rvest
• dplyr
• tidyr

Please ensure these are installed before running the script.