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chore(deps): update CPM packages #3428

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Merged
eseiler merged 2 commits into from
Aug 25, 2026
Merged

chore(deps): update CPM packages #3428

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b3b40ce
chore(deps): update CPM packages
seqan-actions Aug 22, 2026
e3f9f88
fix: gcc-14 on macOS
eseiler Aug 25, 2026
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2 changes: 1 addition & 1 deletion cmake/package-lock.cmake
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Expand Up @@ -40,7 +40,7 @@ CPMDeclarePackage (benchmark
OPTIONS "BENCHMARK_ENABLE_TESTING OFF" "BENCHMARK_ENABLE_WERROR OFF"
"CMAKE_MESSAGE_LOG_LEVEL WARNING")
# googletest
set (SEQAN3_GOOGLETEST_VERSION 1.17.0 CACHE STRING "")
set (SEQAN3_GOOGLETEST_VERSION 1.18.0 CACHE STRING "")
CPMDeclarePackage (googletest
NAME GTest
VERSION ${SEQAN3_GOOGLETEST_VERSION}
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5 changes: 4 additions & 1 deletion test/unit/io/sam_file/sam_file_seek_test.cpp
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Expand Up @@ -16,7 +16,10 @@
#include <seqan3/test/fixture/io/sam_file/simple_three_verbose_reads_fixture.hpp>
#include <seqan3/test/pretty_printing.hpp>

using sam_file_seek_test_fixture = std::tuple<std::filesystem::path, std::vector<std::streampos>>;
// GCC 14 on macOS runs into an internal compiler error when googletest's parameterised test machinery is
// instantiated with a parameter type that carries an ABI tag, e.g. std::filesystem::path or std::string, also when
// nested inside a std::tuple. std::string_view carries no ABI tag and converts to std::filesystem::path in SetUp().
using sam_file_seek_test_fixture = std::tuple<std::string_view, std::vector<std::streampos>>;

struct sam_file_seek_test : public ::testing::TestWithParam<sam_file_seek_test_fixture>
{
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5 changes: 4 additions & 1 deletion test/unit/io/sequence_file/sequence_file_seek_test.cpp
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Expand Up @@ -16,7 +16,10 @@
#include <seqan3/test/fixture/io/sequence_file/standard_fixture.hpp>
#include <seqan3/test/pretty_printing.hpp>

using sequence_file_seek_test_fixture = std::tuple<std::filesystem::path /*sequence_file_path*/,
// GCC 14 on macOS runs into an internal compiler error when googletest's parameterised test machinery is
// instantiated with a parameter type that carries an ABI tag, e.g. std::filesystem::path or std::string, also when
// nested inside a std::tuple. std::string_view carries no ABI tag and converts to std::filesystem::path in SetUp().
using sequence_file_seek_test_fixture = std::tuple<std::string_view /*sequence_file_path*/,
bool /*has_base_qualities*/,
std::vector<std::streampos> /*file_positions*/>;

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