CI

Workflow runs for CI

• chore: update actions/upload-artifact action to v7.0.2

  failed:
  CI#539:Pull request#182openedbyseqeralabs-renovate[bot]Bot
  renovate/actions-upload-artifact-7.x

  Oct 26, 20265m 3s
  More actions for workflow run 539

• chore: update actions/download-artifact action to v8.0.2

  failed:
  CI#538:Pull request#181openedbyseqeralabs-renovate[bot]Bot
  renovate/actions-download-artifact-8.x

  Oct 26, 20265m 50s
  More actions for workflow run 538

• chore: update actions/deploy-pages action to v5.0.1

  failed:
  CI#537:Pull request#180openedbyseqeralabs-renovate[bot]Bot
  renovate/actions-deploy-pages-5.x

  Oct 26, 20264m 28s
  More actions for workflow run 537

• chore: update dtolnay/rust-toolchain digest to 683b588

  failed:
  CI#536:Pull request#179openedbyseqeralabs-renovate[bot]Bot
  renovate/dtolnay-rust-toolchain-digest

  Oct 26, 20265m 26s
  More actions for workflow run 536

• fix(bam): per-reference CRAM fetch keeps only that reference's records

  failed:
  CI#535:Pull request#178openedbyNicoDeVeaux
  ndv/fix-pr118-cram-multiref-fetch

  Oct 23, 20264m 0s
  More actions for workflow run 535

• fix(bam): unmapped sweep returns only records with no reference

  failed:
  CI#534:Pull request#177openedbyNicoDeVeaux
  ndv/fix-pr118-unmapped-sweep

  Oct 23, 20263m 59s
  More actions for workflow run 534

• fix(counting): claim a chromosome name mismatch only when names don't overlap

  failed:
  CI#533:Pull request#176openedbyNicoDeVeaux
  ndv/fix-no-genic-reads-diagnostic

  Oct 23, 20264m 48s
  More actions for workflow run 533

• fix(flagstat): split counts by QC pass/fail and follow samtools' flagstat_loop

  failed:
  CI#532:Pull request#175openedbyNicoDeVeaux
  ndv/fix-flagstat-qcfail-proper-dup

  Oct 23, 20265m 55s
  More actions for workflow run 532

• chore: update docker/setup-buildx-action action to v4.4.1 - autoclosed

  failed:
  CI#531:Pull request#172synchronizebyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-setup-buildx-action-4.x

  Sep 22, 20263m 28s
  More actions for workflow run 531

• chore: update docker/setup-buildx-action action to v4.4.1 - autoclosed

  failed:
  CI#530:Pull request#172synchronizebyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-setup-buildx-action-4.x

  Sep 21, 20264m 50s
  More actions for workflow run 530

• chore: update docker/build-push-action action to v7.4.0 - autoclosed

  failed:
  CI#529:Pull request#168synchronizebyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-build-push-action-7.x

  Sep 21, 20265m 45s
  More actions for workflow run 529

• chore: update dtolnay/rust-toolchain digest to 02cb101 - autoclosed

  failed:
  CI#528:Pull request#147synchronizebyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/dtolnay-rust-toolchain-digest

  Sep 20, 20265m 5s
  More actions for workflow run 528

• chore: update docker/setup-buildx-action action to v4.4.1 - autoclosed

  failed:
  CI#527:Pull request#172openedbyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-setup-buildx-action-4.x

  Sep 7, 20264m 21s
  More actions for workflow run 527

• chore: update actions/deploy-pages action to v5.0.1 - autoclosed

  failed:
  CI#526:Pull request#171openedbyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/actions-deploy-pages-5.x

  Sep 7, 20266m 1s
  More actions for workflow run 526

• chore: update docker/metadata-action action to v6.2.0 - autoclosed

  failed:
  CI#525:Pull request#170openedbyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-metadata-action-6.x

  Aug 31, 20266m 51s
  More actions for workflow run 525

• chore: update docker/login-action action to v4.6.0 - autoclosed

  failed:
  CI#524:Pull request#169openedbyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-login-action-4.x

  Aug 31, 20265m 14s
  More actions for workflow run 524

• chore: update docker/build-push-action action to v7.4.0 - autoclosed

  failed:
  CI#523:Pull request#168openedbyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/docker-build-push-action-7.x

  Aug 31, 20264m 37s
  More actions for workflow run 523

• chore: update dependency rust to 1.98 - autoclosed

  failed:
  CI#522:Pull request#167openedbyseqeralabs-renovate[bot]Bot
  renovate-autodiscover/rust-1.x

  Aug 31, 20264m 31s
  More actions for workflow run 522

• feat(coverage): bigWig tracks from the alignment pass

  failed:
  CI#521:Pull request#166openedbyBenjaminDEMAILLE
  BenjaminDEMAILLE:feat/coverage-bigwig

  Aug 29, 202630d 0h 4m 20s
  More actions for workflow run 521

• fix(deps): bump crossbeam-epoch for RUSTSEC-2026-0204

  failed:
  CI#520:Pull request#165openedbyBenjaminDEMAILLE
  BenjaminDEMAILLE:fix/audit-crossbeam-epoch

  Aug 29, 202630d 0h 4m 24s
  More actions for workflow run 520

• feat(rna): Picard CollectRnaSeqMetrics

  failed:
  CI#519:Pull request#164openedbyBenjaminDEMAILLE
  BenjaminDEMAILLE:feat/rna-rnaseq-metrics

  Aug 29, 202630d 0h 0m 27s
  More actions for workflow run 519

• feat(protein): coding-region QC

  failed:
  CI#518:Pull request#162openedbyBenjaminDEMAILLE
  BenjaminDEMAILLE:feat/protein-coding

  Aug 29, 20261h 13m 32s
  More actions for workflow run 518

• feat(rna): RSeQC geneBody_coverage and read_GC

  failed:
  CI#517:Pull request#161openedbyBenjaminDEMAILLE
  BenjaminDEMAILLE:feat/rna-genebody-readgc

  Aug 29, 202630d 0h 2m 5s
  More actions for workflow run 517

• feat(reads): raw FASTQ quality control

  failed:
  CI#516:Pull request#160synchronizebyBenjaminDEMAILLE
  BenjaminDEMAILLE:feat/reads-fastq

  Aug 29, 202630d 0h 0m 31s
  More actions for workflow run 516

• feat(protein): mass spectrometry QC from mzML

  failed:
  CI#515:Pull request#159synchronizebyBenjaminDEMAILLE
  BenjaminDEMAILLE:feat/protein-spectra

  Aug 29, 20262h 25m 16s
  More actions for workflow run 515