All issues

Search results

Koina predictors: one failed batch discards every successful batch, and callers cannot cancel

Status: Open.

#1379 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 26, 2026

RnaDigestionParams: a .toml written before 1.0.592 has no SpecificRnase, so it reloads as top-down

Status: Open.

#1370 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 25, 2026

#1343 regresses DNA-alphabet RNA FASTAs: every T loads as fixed 5-methyluridine, and lowercase files are skipped

Status: Open.

#1359 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 24, 2026

Breaking changes shipped in 1.0.592: MBRScore double→double? (#1345), FromMassFeatures binary break (#1305), SpecificDigestionAgent breaks TOML settings (#1318)

Status: Open.

#1358 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 24, 2026

Koina: AllowedUnimodIds is not enforced for modifications that already carry a UNIMOD id

Status: Open.

#1331 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 21, 2026

Guard the other direction: a shipped mod with no DR Unimod line that matches a unimod.xml record exactly

Status: Open.

#1329 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 20, 2026

Gzipped databases are decompressed to a fixed temp.fasta / temp.xml in the input's folder: read-only folders fail, concurrent runs collide

Status: Open.

#1323 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 18, 2026

No DissociationType.IsCid() helper, so the CID/LowCID equivalence gets respelled in each repo

Status: Open.

#1310 In smith-chem-wisc/mzLib;

· acesnik opened on Sep 17, 2026

ScanMetadata.PrecursorFractionalIntensity documents the wrong denominator

Status: Open.

#1288 In smith-chem-wisc/mzLib;

· trishorts opened on Sep 9, 2026

Rewrite RealDataMbrTest: replace machine-dependent hard-coded counts with top-50 transfer checks + distribution-separation assertions

Status: Open.

#1283 In smith-chem-wisc/mzLib;

· Alexander-Sol opened on Sep 8, 2026

MBR IsotopicDistributionScore is anti-discriminative (2-point Pearson correlation degeneracy)

Status: Open.

#1282 In smith-chem-wisc/mzLib;

· Alexander-Sol opened on Sep 8, 2026

CI doesn't validate packages and version numbers listed in the .nuspec

Status: Open.

#1281 In smith-chem-wisc/mzLib;

· Alexander-Sol opened on Sep 8, 2026