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1. Biohub/esm Biohub/esm Public

   Jupyter Notebook 3k 404

2. google-deepmind/nuclease_design google-deepmind/nuclease_design Public

   ML-guided enzyme engineering

   Jupyter Notebook 86 20

3. songlab-cal/tape songlab-cal/tape Public

   Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

   Python 745 134

4. google-research/slip google-research/slip Public

   SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.

   Python 20 10

5. songlab-cal/factored-attention songlab-cal/factored-attention Public

   This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention

   Jupyter Notebook 59 9