Issues

gather_emitter_results captures embedded-process _inputs/_outputs schema, not just data
vivarium-collective/process-bigraph#215 · opened on Sep 26, 2026
Composite checks groundness only after realizing the document: an open site can be silently ignored, or crash realization
vivarium-collective/process-bigraph#213 · opened on Sep 23, 2026
1
Framework hardening: engine + core quick wins (stack review)
vivarium-collective/process-bigraph#210 · opened on Sep 17, 2026
1
nextflow: the run_step port manifest <port>.json is globbable, so an output decl named after its port sweeps it into the channel
vivarium-collective/process-bigraph#208 · opened on Sep 8, 2026
render_composite descends into a nested composite with the INNER path, so sibling sub-composites emit duplicate process names
vivarium-collective/process-bigraph#207 · opened on Sep 7, 2026
Provide configuration to composite for specifying a working dir for all emitters
vivarium-collective/process-bigraph#109 · opened on Mar 2, 2026
make MathExpressionStep work with vectors
vivarium-collective/process-bigraph#108 · opened on Jan 11, 2026
Documentation from processes
vivarium-collective/process-bigraph#104 · opened on Jan 3, 2026
Debug mode: relative runtime of process updates vs system
vivarium-collective/process-bigraph#101 · opened on Dec 22, 2025
Make emitter more usable
vivarium-collective/process-bigraph#100 · opened on Dec 22, 2025
Debug mode: check update outputs
vivarium-collective/process-bigraph#99 · opened on Dec 22, 2025
Math step
vivarium-collective/process-bigraph#98 · opened on Dec 22, 2025
Track the sources of wires to trace back where connections come from
vivarium-collective/process-bigraph#96 · opened on Sep 22, 2025
Make the discovery of process instances more precise than searching through the whole tree
vivarium-collective/process-bigraph#89 · opened on May 2, 2025
deal with 'shared'
vivarium-collective/process-bigraph#84 · opened on Mar 21, 2025
1
Add process for performing BRS given a set of configured reactions (redex/reactum) on a given subtree
vivarium-collective/process-bigraph#82 · opened on Mar 14, 2025
Create a test for the state from a bridge being set in the composite
vivarium-collective/process-bigraph#73 · opened on Nov 26, 2024
When a composite is created, initialize its states from across the bridge
vivarium-collective/process-bigraph#72 · opened on Nov 26, 2024
Composite needs to find processes in lists also (or wherever else they may be)
vivarium-collective/process-bigraph#70 · opened on Sep 13, 2024
Support array type of unknown size?
vivarium-collective/process-bigraph#66 · opened on Jul 19, 2024
2
Rename substates selectively using _path
vivarium-collective/process-bigraph#64 · opened on Jul 16, 2024
State emitter
vivarium-collective/process-bigraph#63 · opened on Jul 16, 2024
Make interactive glossary notebook to explain process bigraph
vivarium-collective/process-bigraph#59 · opened on May 7, 2024
Make a new step that will run a process until a certain condition is met
vivarium-collective/process-bigraph#58 · opened on Apr 12, 2024
Make plotting step, make a "run process" workflow that plots the timeseries
vivarium-collective/process-bigraph#57 · opened on Apr 12, 2024