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PathoGenOmics-Lab
BAMpiro
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Merge pull request #15 from PathoGenOmics-Lab/fix/docs-links-docker-home
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#28:
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Graph Update: pip in /. #1590695461
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Merge pull request #14 from PathoGenOmics-Lab/feat/e2e-test
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Point the docs at main, and give Docker runs a writable home
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Run the pipeline for real in CI, on a cohort whose truth is known
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Merge pull request #13 from PathoGenOmics-Lab/feat/indels-mnv
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Deliver indels, and read two SNPs of one codon as one change
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Deliver indels, and read two SNPs of one codon as one change
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Merge pull request #12 from PathoGenOmics-Lab/fix/garnatxa-sbatch-main
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Run main from the Garnatxa launcher, pulled on every launch
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Merge pull request #11 from PathoGenOmics-Lab/fix/blindspot-lift
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Mask the blind spots a lift between distant anchors used to drop
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Merge pull request #10 from PathoGenOmics-Lab/fix/per-reference-genes
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Draw each reference's own genes under its own samples
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Draw each reference's own genes under its own samples
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Merge pull request #9 from PathoGenOmics-Lab/fix/canonical-coordinates
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Give every variant its H37Rv coordinate and numbering, on any reference
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Merge pull request #8 from PathoGenOmics-Lab/feat/cohort-analyses
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Merge pull request #7 from PathoGenOmics-Lab/feat/snp-matrix-depth
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Merge pull request #6 from PathoGenOmics-Lab/feat/gene-conversion
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