Repositories list

• cBioLab

  Public
  Prototype: cohort-level temporal queries over clinical timeline events (DSL -> ClickHouse SQL)

  TypeScript

  •00 forks in cBioPortal/cBioLab•00 stars in cBioPortal/cBioLab•55 issues in cBioPortal/cBioLab•1515 pull requests in cBioPortal/cBioLab•Updated Nov 7, 2026Nov 7, 2026

• LibreChat

  Public
  Enhanced ChatGPT Clone: Features Agents, MCP, DeepSeek, Anthropic, AWS, OpenAI, Responses API, Azure, Groq, o1, GPT-5, Mistral, OpenRouter, Vertex AI, Gemini, A…

  TypeScript

  •

  MIT License

  •9.6k9.6k forks in cBioPortal/LibreChat•00 stars in cBioPortal/LibreChat•00 issues in cBioPortal/LibreChat•33 pull requests in cBioPortal/LibreChat•Updated Nov 7, 2026Nov 7, 2026

• cbioportal-frontend

  Public
  React Frontend of cBioPortal :tada:

  reactmobxcancer-genomics

  reactmobxcancer-genomics

  TypeScript

  •

  Apache License 2.0

  •445445 forks in cBioPortal/cbioportal-frontend•152152 stars in cBioPortal/cbioportal-frontend•00 issues in cBioPortal/cbioportal-frontend•8585 pull requests in cBioPortal/cbioportal-frontend•Updated Nov 6, 2026Nov 6, 2026

• cbioportal

  Public
  cBioPortal for Cancer Genomics

  visualizationsciencecancer-genomics+ 1

  visualizationsciencecancer-genomicsprecision-medicine

  Java

  •

  Apache License 2.0

  •889889 forks in cBioPortal/cbioportal•1.1k1.1k stars in cBioPortal/cbioportal•311311 issues in cBioPortal/cbioportal•5656 pull requests in cBioPortal/cbioportal•Updated Nov 6, 2026Nov 6, 2026

• cbioportal-core

  Public
  Externalized cBioPortal Core

  Java

  •

  Apache License 2.0

  •3636 forks in cBioPortal/cbioportal-core•55 stars in cBioPortal/cbioportal-core•2727 issues in cBioPortal/cbioportal-core•4242 pull requests in cBioPortal/cbioportal-core•Updated Nov 6, 2026Nov 6, 2026

• cbioportal-go

  Public
  ⚠️ Experimental: a reimplementation of cBioPortal in Go (importer + REST API on ClickHouse, running the unmodified cBioPortal frontend). Not an official cBioPor…

  Go

  •

  Apache License 2.0

  •00 forks in cBioPortal/cbioportal-go•00 stars in cBioPortal/cbioportal-go•44 issues in cBioPortal/cbioportal-go•22 pull requests in cBioPortal/cbioportal-go•Updated Nov 6, 2026Nov 6, 2026

• cell-explorer-py

  Public
  Python

  •

  MIT License

  •33 forks in cBioPortal/cell-explorer-py•11 star in cBioPortal/cell-explorer-py•2222 issues in cBioPortal/cell-explorer-py•33 pull requests in cBioPortal/cell-explorer-py•Updated Nov 6, 2026Nov 6, 2026

• cbioportal-cell-explorer

  Public
  TypeScript

  •

  MIT License

  •44 forks in cBioPortal/cbioportal-cell-explorer•11 star in cBioPortal/cbioportal-cell-explorer•2121 issues in cBioPortal/cbioportal-cell-explorer•1212 pull requests in cBioPortal/cbioportal-cell-explorer•Updated Nov 6, 2026Nov 6, 2026

• cbioportal-test

  Public
  Tests for cBioPortal.

  HTML

  •

  MIT License

  •33 forks in cBioPortal/cbioportal-test•00 stars in cBioPortal/cbioportal-test•00 issues in cBioPortal/cbioportal-test•22 pull requests in cBioPortal/cbioportal-test•Updated Nov 5, 2026Nov 5, 2026

• cbioportal-navigator

  Public
  MCP server for natural language user query -> cBioPortal URL

  TypeScript

  •77 forks in cBioPortal/cbioportal-navigator•44 stars in cBioPortal/cbioportal-navigator•1111 issues in cBioPortal/cbioportal-navigator•22 pull requests in cBioPortal/cbioportal-navigator•Updated Nov 5, 2026Nov 5, 2026

• datahub

  Public
  A centralized location for storing curated data from cBioPortal

  HTML

  •143143 forks in cBioPortal/datahub•218218 stars in cBioPortal/datahub•136136 issues in cBioPortal/datahub•3333 pull requests in cBioPortal/datahub•Updated Nov 5, 2026Nov 5, 2026

• cbioportal-mcp

  Public
  Python

  •

  Apache License 2.0

  •1515 forks in cBioPortal/cbioportal-mcp•1717 stars in cBioPortal/cbioportal-mcp•2727 issues in cBioPortal/cbioportal-mcp•1818 pull requests in cBioPortal/cbioportal-mcp•Updated Nov 4, 2026Nov 4, 2026

• cbioportal-docker-compose

  Public
  Run cBioPortal using Docker Compose

  Shell

  •

  Apache License 2.0

  •6363 forks in cBioPortal/cbioportal-docker-compose•2323 stars in cBioPortal/cbioportal-docker-compose•88 issues in cBioPortal/cbioportal-docker-compose•77 pull requests in cBioPortal/cbioportal-docker-compose•Updated Nov 4, 2026Nov 4, 2026

• oncotree

  Public
  Python

  •

  Creative Commons Attribution 4.0 International

  •3232 forks in cBioPortal/oncotree•5353 stars in cBioPortal/oncotree•3131 issues in cBioPortal/oncotree•1717 pull requests in cBioPortal/oncotree•Updated Nov 4, 2026Nov 4, 2026

• cbioportal-tile-server

  Public
  Python

  •22 forks in cBioPortal/cbioportal-tile-server•00 stars in cBioPortal/cbioportal-tile-server•00 issues in cBioPortal/cbioportal-tile-server•33 pull requests in cBioPortal/cbioportal-tile-server•Updated Nov 3, 2026Nov 3, 2026

• relicensing

  Public
  00 forks in cBioPortal/relicensing•00 stars in cBioPortal/relicensing•44 issues in cBioPortal/relicensing•00 pull requests in cBioPortal/relicensing•Updated Nov 2, 2026Nov 2, 2026

• cbioportal-helm

  Public
  Helm charts for cBioPortal Kubernetes Deployment

  Apache License 2.0

  •11 fork in cBioPortal/cbioportal-helm•00 stars in cBioPortal/cbioportal-helm•22 issues in cBioPortal/cbioportal-helm•33 pull requests in cBioPortal/cbioportal-helm•Updated Oct 29, 2026Oct 29, 2026

• cbioportal-mcp-qa

  Public
  cBioPortal Chat Benchmark

  HTML

  •

  Apache License 2.0

  •22 forks in cBioPortal/cbioportal-mcp-qa•33 stars in cBioPortal/cbioportal-mcp-qa•44 issues in cBioPortal/cbioportal-mcp-qa•22 pull requests in cBioPortal/cbioportal-mcp-qa•Updated Oct 26, 2026Oct 26, 2026

• session-service

  Public
  Java

  •

  Apache License 2.0

  •2222 forks in cBioPortal/session-service•88 stars in cBioPortal/session-service•1212 issues in cBioPortal/session-service•22 pull requests in cBioPortal/session-service•Updated Oct 21, 2026Oct 21, 2026

• cbioportal-release-manager

  Public
  Python

  •00 forks in cBioPortal/cbioportal-release-manager•00 stars in cBioPortal/cbioportal-release-manager•22 issues in cBioPortal/cbioportal-release-manager•00 pull requests in cBioPortal/cbioportal-release-manager•Updated Oct 13, 2026Oct 13, 2026

• maf

  Public
  Utility classes for the Mutation Annotation Format (MAF)

  Java

  •00 forks in cBioPortal/maf•00 stars in cBioPortal/maf•00 issues in cBioPortal/maf•11 pull request in cBioPortal/maf•Updated Oct 9, 2026Oct 9, 2026

• data-contribution-dashboard

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •00 forks in cBioPortal/data-contribution-dashboard•00 stars in cBioPortal/data-contribution-dashboard•00 issues in cBioPortal/data-contribution-dashboard•00 pull requests in cBioPortal/data-contribution-dashboard•Updated Sep 25, 2026Sep 25, 2026

• datahub-study-curation-tools

  Public
  Contains tools used by cBioPortal data curators when preparing data for upload into the datahub repos.

  HTML

  •

  GNU Affero General Public License v3.0

  •2020 forks in cBioPortal/datahub-study-curation-tools•2323 stars in cBioPortal/datahub-study-curation-tools•22 issues in cBioPortal/datahub-study-curation-tools•1010 pull requests in cBioPortal/datahub-study-curation-tools•Updated Sep 20, 2026Sep 20, 2026

• cancerhotspots

  Public
  Cancer Hotspots

  JavaScript

  •

  GNU Affero General Public License v3.0

  •1010 forks in cBioPortal/cancerhotspots•88 stars in cBioPortal/cancerhotspots•88 issues in cBioPortal/cancerhotspots•00 pull requests in cBioPortal/cancerhotspots•Updated Sep 19, 2026Sep 19, 2026

• database-exporter

  Public
  Manage public cBioPortal database exports/dumps and pipelines for publishing on external platforms, including HuggingFace.

  Python

  •00 forks in cBioPortal/database-exporter•00 stars in cBioPortal/database-exporter•00 issues in cBioPortal/database-exporter•00 pull requests in cBioPortal/database-exporter•Updated Sep 4, 2026Sep 4, 2026

• cbioportal-onco-variant-annotation-bench

  Public
  Independent benchmark of variant annotation/effect tools (Genome Nexus, Ensembl VEP, fastVEP, vibe-vep, OpenCRAVAT) against published cancer datasets (MSK-IMPAC…

  Python

  •11 fork in cBioPortal/cbioportal-onco-variant-annotation-bench•00 stars in cBioPortal/cbioportal-onco-variant-annotation-bench•00 issues in cBioPortal/cbioportal-onco-variant-annotation-bench•11 pull request in cBioPortal/cbioportal-onco-variant-annotation-bench•Updated Jul 8, 2026Jul 8, 2026

• cbioportal-assistant-api

  Public
  Standalone chat API microservice for the cBioPortal AI assistant.

  TypeScript

  •00 forks in cBioPortal/cbioportal-assistant-api•00 stars in cBioPortal/cbioportal-assistant-api•00 issues in cBioPortal/cbioportal-assistant-api•00 pull requests in cBioPortal/cbioportal-assistant-api•Updated Jun 17, 2026Jun 17, 2026

• ai_curation_assistant

  Public
  00 forks in cBioPortal/ai_curation_assistant•00 stars in cBioPortal/ai_curation_assistant•00 issues in cBioPortal/ai_curation_assistant•00 pull requests in cBioPortal/ai_curation_assistant•Updated May 14, 2026May 14, 2026

• GSoC

  Public
  Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

  6464 forks in cBioPortal/GSoC•201201 stars in cBioPortal/GSoC•3232 issues in cBioPortal/GSoC•11 pull request in cBioPortal/GSoC•Updated Mar 20, 2026Mar 20, 2026

• installation-map

  Public
  cBioPortal Installation Map

  TypeScript

  •44 forks in cBioPortal/installation-map•00 stars in cBioPortal/installation-map•00 issues in cBioPortal/installation-map•00 pull requests in cBioPortal/installation-map•Updated Mar 1, 2026Mar 1, 2026